ColVis doesn't seem to work when i have a footer on a table. It is throwing exceptions in firebug and only hides the thead column, not the tbody, or tfoot columns.
As shown in this example it should work okay: http://datatables.net/release-datatables/extras/ColVis/index.html . However it does assume that there is one TFOOT / TH element for each column. If you are using colspan / rowspan then it probably will give an error.
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Allan